PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G053500.1.p
Common NameGLYMA_20G053500, LOC100786516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 881aa    MW: 99406.8 Da    PI: 6.7045
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G053500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.63.1e-1660135190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYneYA+++GFs ++    +sk +ge + r+fvC  eg +++ +++              C+a+++++++ ++kw+vtk+++eH+H ++
  Glyma.20G053500.1.p  60 NFYNEYARHMGFSSKVGPYGRSKADGENMYREFVCGGEGLKKSPNES--------------CNAMIRIELKGQNKWVVTKFVKEHSHYMV 135
                          6***************************************9998777..............**************************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1260135IPR004330FAR1 DNA binding domain
PfamPF105512.2E-28275366IPR018289MULE transposase domain
PROSITE profilePS5096611.14553589IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-9559587IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDVQVINVEV SGHQTKADDG DAEPSDGEVN NAENYGSHVE DEISEPHMGM EFGSEDVAKN  60
FYNEYARHMG FSSKVGPYGR SKADGENMYR EFVCGGEGLK KSPNESCNAM IRIELKGQNK  120
WVVTKFVKEH SHYMVSSSKA HSRRPSKHFS SVGRTMPETY QGVGLVPSGV MYVSMDGNRV  180
SNQNTRGVKN IHTAAAERSH LVKNSTLMNY SVRPCSQNKT LGRDAHNLLE YFKKMQAENP  240
GFFYAIQLDE ENRMSNVFWA DARSRTAYSY YGDTVHLDTT YKVNQYRVPF APFTGVNHHG  300
QMVLFGCALI LDDSEASFLW LLKTFLTAMN DRQPISITTD QDRAMQTAVS QVFPQARHCI  360
SKWQILREGQ EKLAHVCLAH PNFQVELYNC INLTETIEEF ESSWNFILNK YELRGNDWLQ  420
SLYNARAQWV PAYFRDSFFA AISPTQGFDG SFFDGYVNQQ TTLPLFFRQY ERALESWIEK  480
EIEADFETVS TTPVLKTPSP MEKQAANLYT RKIFSKFQDE LVETFVYTAN RIEGDGPNST  540
FRVAKFEDDQ KAYMVTLNHS ELKANCSCQM FEYAGILCKH ILTVFTVTNV LTLPPHYILK  600
RWTRNAKNSA GLDEHTGESH AQESLTARYG NLCKEAIRYA EEGSVTVETY NAAISGLREG  660
VKKVANVKKS VAKVTPPNNQ ASGTAYDDRK TTPTLDTTPL LWPWQDEITR RFNLNDAGGP  720
VQSVADLNLP RMAPVSLHRD DGPSENVVVL PCLKSMTWVM ENRNSTPGNK VAVINLKLQD  780
YSRAPSAESE VKFHLSRVTL EPMLKSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSHADDAQ SEPLSKKHRK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218560.0pod
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605632.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_014628221.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLI1NE480.0I1NE48_SOYBN; Uncharacterized protein
STRINGGLYMA20G11710.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3